Table
5 Classifications
obtained with the model
Summary of re-classification of
known genes and classification of unknown genes to the 23 broad biological
function classes by using the model evalutated in Table 4.
|
PROCESS |
annotate genes |
re-classifications for known genes (correct) |
classifications for unknown genes |
|
Ion homeostasis |
4 |
4 (4) |
4 |
|
Protein targeting |
6 |
8 (6) |
2 |
|
Blood coagulation |
10 |
13 (10) |
34 |
|
DNA metabolism |
19 |
33 (19) |
28 |
|
Intracellular
signaling cascade |
26 |
39 (25) |
14 |
|
Energy pathways |
6 |
6 (6) |
0 |
|
Cell cycle |
47 |
66 (44) |
38 |
|
Oncogenesis |
17 |
41 (17) |
31 |
|
Circulation |
15 |
17 (15) |
3 |
|
Cell death |
16 |
22 (16) |
26 |
|
Developmental
processes |
15 |
23 (15) |
21 |
|
Transcription |
52 |
61 (47) |
88 |
|
Defense (immune) response |
37 |
44 (32) |
20 |
|
Cell adhesion |
30 |
32 (29) |
19 |
|
Stress response |
17 |
26 (17) |
22 |
|
Protein metabolism and modification |
33 |
45 (33) |
35 |
|
Cell motility |
32 |
40 (29) |
21 |
|
Cell surface rec linked signal transd |
27 |
38 (26) |
34 |
|
Lipid metabolism |
26 |
44 (25) |
45 |
|
Transport |
22 |
30 (22) |
19 |
|
Cell organization and biogenesis |
33 |
40 (30) |
13 |
|
Cell proliferation |
53 |
60 (46) |
30 |
Amino acid and derivative metabolism
|
6 |
6 (6) |
2 |
|
|
|
|
|