Supervised student thesis

Lisa Kruggel and Kerstin Strömvall. Clustering and Motif Finding of an Expression Data Set from Aspen Tree (Populus) Leaves, Student project (4ECTS), 2010.

Ali Shamsi and Tarek Elhasi. Clustering and motif finding in poplar gene expression data, Student project (4ECTS), 2009.

Peter Boman and Daniel Decker. Visualisation of gene coexpression networks, Applied functional genomics, 7.5 ECTS, 2009.

Patrik Björkholm. Method for recognizing local descriptors of protein structures using Hidden Markov Models, Master thesis, 2008.

Johan Alexander Källberg Zvrskovec. Protein structure prediction by search among combinations of reoccurring structural components, Student project (10 points), 2008.

Minyan Hong. Fold recognition using local descriptors of protein structure and Hidden Markov Models, Student project (10 points), 2006 and Master thesis, 2007.

Min Jia. Proteochemometrics modeling of carbonic anhydrase-ligand interactions using rule-based and linear methods, Student project (5 points), 2005.

Marta Luksza. A System for Predicting Protein Function from Structure, Master thesis, 2005.

Anna Hennecke. Predicting protein function from its 3-dimensional structure - Biological validation of protein function predictions, Student project (10 points), 2005.