Press releases and reviews |
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Press: HALLÅ DÄR…, 2011. Vetenskapsrådet: Popular project description, 2011. ----------------------------------------------------------------------------------------------------------------- Article: K. Wabnik, T. R. Hvidsten, A. Kedzierska, J. Van Leene, G. De Jaeger, G. T. S. Beemster, J. Komorowski and M. T. R. Kuiper. Gene expression trends and protein features effectively complement each other in gene function prediction, Bioinformatics 25 (3):322-330, 2009. Review: Michael F. Ochs. Knowledge-based data analysis comes of age. Briefings in Bioinformatics 11(1): 30-39, 2010. ----------------------------------------------------------------------------------------------------------------- Article: P. Björkholm, P. Daniluk, A. Kryshtafovych, K. Fidelis, R. Andersson and T. R. Hvidsten. Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts. Bioinformatics 25: 1264-1270, 2009. Review: Iakes Ezkurdia, Osvaldo Graña, José M. G. Izarzugaza, Michael L. Tress. Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8. Proteins: Structure, Function and Bioinformatics 77 (Suppl 9): 196-209, 2009. NOTE: Our group is RR158. Review: Bohdan Monastyrskyy, Krzysztof Fidelis, Anna Tramontano and Andriy Kryshtafovych. Evaluation of residue–residue contact predictions in CASP9. Proteins: Structure, Function and Bioinformatics, 2011. NOTE: Our group is G158. ----------------------------------------------------------------------------------------------------------------- Article: H. Strömbergsson, P. Daniluk, A. Kryshtafovych, K. Fidelis, J. E. S. Wikberg, G. J. Kleywegt and T. R. Hvidsten. Interaction Model Based on Local Protein Substructures Generalizes to the Entire Structural Enzyme-Ligand Space, Journal of Chemical Information and Modeling 48 (11): 2278–2288, 2008. Review: Didier Rognan. Structure-Based Approaches to Target Fishing and Ligand Profiling. Mol. Inf. 29: 176 – 187, 2010. ----------------------------------------------------------------------------------------------------------------- Article: H. Strömbergsson, A. Kryshtafovych, P. Prusis, K. Fidelis, J. E. S. Wikberg, J. Komorowski and T. R. Hvidsten. Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures. Proteins: Structure, Function and Bioinformatics 65: 568-579, 2006. Review: A. Bender, D. W. Youngb, J. L. Jenkinsa, M. Serranoc, D. Mikhailova, P. A. Clemonsc and J. W. Daviesa. Chemogenomic Data Analysis: Prediction of Small-Molecule Targets and the Advent of Biological Fingerprints. Combinatorial Chemistry & High Throughput Screening 10: 719-731, 2007. Review: Lei Xie, Li Xie and Philip E. Bourne. Structure-based systems biology for analyzing off-target binding. Current Opinion in Structural Biology 21: 1–11, 2011. ----------------------------------------------------------------------------------------------------------------- Article: T. R. Hvidsten, B. Wilczynski, A. Kryshtafovych, J. Tiuryn, J. Komorowski and K. Fidelis. Discovering regulatory binding site modules using rule-based learning. Genome Research 15: 856-66, 2005. Press: "Grova mängder" avslöjar hur gener uttrycks, in BiotechSweden, 8: 23, September 27, 2005. Press release: Ny metod förklarar hur genernas strömbrytare fungerar [pdf | others] Press release: New technique helps identify multiple DNA regulatory sites [pdf | others] ----------------------------------------------------------------------------------------------------------------- Article: J. L. Dennis, T. R. Hvidsten, J. Komorowski, E. C. Wit, A. Bell, I. Downie, J. Mooney, C. Verbeke, C. Bellamy, W.N. Keith and K. A. Oien. Markers of Adenocarcinoma Characteristic of the Site of Origin - Development of a Diagnostic Algorithm, Clinical Cancer Research 11(10): 3766-72, 2005. Review: Diagnostic algorithm for prediction of adenocarcinoma sites of origin, RESEARCH HIGHLIGHTS in Nature Clinical Practice Oncology, 2(8): 383, 2005. ----------------------------------------------------------------------------------------------------------------- Article: T. R. Hvidsten, A. Kryshtafovych, J. Komorowski and K. Fidelis. A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins, ECCB2003, Bioinformatics 19 Suppl 2: II81-II91, 2003. Review: J. M. Bujnicki. Protein-Structure Prediction by Recombination of Fragments. ChemBioChem 7: 19 - 27, 2005. ----------------------------------------------------------------------------------------------------------------- Article: T. R. Hvidsten, J. Komorowski, A. K. Sandvik and A. Lægreid. Predicting Gene Function from Gene Expressions and Ontologies, in Pacific Symposium on Biocomputing, 6:299-310, 2001. Review: R. B. Altman and S. Raychaudhuri. Whole-genome expression analysis: challenges beyond clustering. Current Opinion in Structural Biology 11: 340-47, 2001. |
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