Research links

General resources

• ArrayExpress Archive
• Barcode of life
• BioGRID
• Enzyme Nomenclature
• Gene Expression Omnibus (GEO)
• Gene Ontology
• 1000 genomes / 1001 genomes
• The human protein atlas
• The JASPAR database / TRANSFAC
• Kyoto Encyclopedia of Genes and Genomes (KEGG)
• modENCODE
• PDB / SCOP / ASTRAL / CATH
• Pfam
• Taxonomy Browser
• The tree of life web project
• Web Bench

Plant resources

• The Arabidopsis Gene Regulatory Information Server (AGRIS)
• The Arabidopsis Information Resource (TAIR)
• AraNet (Arabidopsis Network)
• ATTED-II
• PLEXdb (Plant Expression Database)
• Plant transcription factor database (PlnTFDB)
• PopGenIE: The Populus Genome Integrative Explorer / ConGenIE
• Populus trichocarpa - Phytozome
• Sequenced plant genomes

Computational tools

• AAindex
• BLAST
• BNFinder - Bayesian Network Finder
• Cufflinks / TopHat
• Cytoscape
• DSSP
• GeneMANIA
• HMMER
• Iterative Signature Algorithm (ISA)
• Paintomics
• Dali / MAMMOTH / POSA
• DisProt
• MapEquation
• ProFunc / FunCoup
• PROSITE
• STAMP

Conferences

• Annual SocBiN Conference: Bioinformatics (SocBiN - Society for Bioinformatics in the Nordic Countries)
• European Conference on Computational Biology(ECCB)
  
• International Conference on Intelligent Systems for Molecular Biology (ISMB)
• International Conference on Research in Computational Molecular Biology (Recomb)
• Pacific Symposium on Biocomputing (PSB)
• Swedish Bioinformatics Workshop for Ph.D. Students and Postdocs (SBW)

Journals

• Bioinformatics
  
• BMC Bioinformatics
• BMC Genomics
• BMC Systems Biology
• Briefings in Bioinformatics
• Briefings in Functional Genomics
• Genome Biology
• Genome Research
• Molecular Systems Biology
• Nature
• Nature Genetics
• Nucleic Acids Research
• PLoS computational biology
• PLos ONE
• Proteins: Structure, Function and Bioinformatics
• PNAS
• Science

Funding

• Carl Tryggers Stiftelse för Vetenskaplig Forskning
• The Community Research and Development Information Service (CORDIS)
• Formas
• The Human Frontier Science Program
• The Kempe Foundations
• Kungl. Skogs- och Lantbruksakademien (KSLA)
• The Swedish Foundation for Strategic Research (SSF)
• The Swedish Research Council (VR)
• Vinnova

Bioinformatics links

• Bioinformatics Organization
• Critical Assessment of protein Structure Prediction (CASP)
• Dialogue for Reverse Engineering Assessments and Methods (DREAM)
• Society for Bioinformatics in the Nordic Countries (SocBin)

Stuff

• Indexed
• PhD comics